BBTools for bioinformatician !
...--------------------------------------------------------------BBMerge.shBBMerge now has a new flag - "outa" or "outadapter". This allows you to automatically detect the adapter sequence of reads with short...2277 days ago
Frequently used bioinformatics tools for viral genome analysis !
...der P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015 Jul 15;31(14):2374-6. doi: 10.1093/bioinformatics/btv120. Epub 2015 Feb 28. Adapter sequences: Optimal enzymes fo...1054 days ago
Illumina based assembly pipeline steps !
Illumina Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) Removal of host reads (Kraken 2; optional) Variant calling Read alignment (Bowtie 2) S...884 days ago