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SATSUMA : Highly sensitive whole-genome synteny alignments.
...m the Broad Institute's web site. An incomplete list of questions and answers (yes, these have really been asked by our users! Please feel free to add your own by e-mailing us) is...2929 days ago
- ...nging the input type automatically changes the output options to the ones specific for the input selected. Then select one or more output types and add your identifiers in the ID li...
2909 days ago
Standardized velvet assembly report
...LAST (to generate alignments against a reference genome). If using BLAT, add faToTwoBit,gfClient,gfServer to your PATH. If using BLAST, add blastall and formatdb. Edi...2719 days ago
- ...e git://github.com/glennhickey/progressiveCactus.git cd progressiveCactus git pull git submodule update --init make It is also convenient to add the location of progress...
2680 days ago
Many-Core Engine (MCE) for Perl example
...he parallel workers. MCE enhances that model by adding the ability to chunk the n...or Many-Core Engine. MCE EXTRAS There are 4 add-on modules for use with MCE....and MCE::Grep. MISCELLANEOUS Miscellaneous additions included with the distr...2666 days ago
- ...lized heatmap (described below) --annotate, -a Add character annotations. --o...annotations (description below) --bars, -b Add track annotations --refere...
2653 days ago
- Circos plot tool (J-Circos) that is an interactive visualization tool that can plot Circos figures, as well as being able to dynamically add data to the figure, and providing inform...
2649 days ago
splitbam: splits a BAM by chromosomes
...ord was found for a chromosome. A pair of 'mock' SAM-Records can also be added to those empty BAMs to avoi...bams for chromosome having no read mapped -m | --mock : if option '-e', add a mock pair of sam records to...2638 days ago
YASRA: Reference based assembler
...n) for aligning the sequences to the reference genome. Please install LASTZ (the newest version on http://www.bx.psu.edu/~rsharris/lastz/newer) and add the LASTZ binary in your exec...2637 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
...fferent methods can be compared side-by-side. gbtools reports summary statistics of bins including marker gene completeness, and allows the user to add or subtract bins with each ot...2612 days ago
