Results for "algorithms"
Bookmarks
NAViGaTOR: Network Analysis, Visualization and Graphing Toronto
...e current version, NAViGaTOR 3, increases modularity, improves scaleability, extends input/output options, brings new network views and analysis algorithms. http://142.150.188.236/na...2125 days ago
Nanopolis: polish a genome assembly
...a reference genome and more (see Nanopolish modules, below). Quickstart http://nanopolish.readthedocs.io/en/latest/quickstart_consensus.html Algorithms http://simpsonlab.github.io/...2102 days ago
gSearch: a fast and flexible general search tool for whole-genome sequencing
gSearch compares sequence variants in the Genome Variation Format (GVF) or Variant Call Format (VCF) with a pre-compiled annotation or with variants in other genomes. Its search algorithms are subsequently optimized and implemented in a multi-threaded manner.2091 days ago
miREM: an expectation-maximization approach for prioritizing miRNAs associated with gene-set
From list of genes... ... to microRNAs Using established miRNA-interaction databases, miREM combines hypergeometric and expectation-maximization algorithms to sieve through your genetic data for microRNA signatures https://bioinfo-csi.nus.edu.sg/mirem2/2081 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...technology into account. Memory- and time- efficient machine learning algorithms that address these shortcomin...les-corrected reads have the highest mapping rate among all competing algorithms and highest accuracy when mos...2077 days ago
LRCstats: a tool for evaluating long reads correction methods
...is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by t..., which can cause issues in downstream analysis. Long read correction algorithms reduce the error rate of long...2075 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...tiple draft and finished-quality sequences to identify functional elements conserved over evolutionary time. Mulan brings together several novel algorithms: the TBA multi-aligner progra...2073 days ago
COSINE: non-seeding method for mapping long noisy sequences
Third generation sequencing (TGS) are highly promising technologies but the long and noisy reads from TGS are difficult to align using existing algorithms. Here, we present COSINE, a conceptually new method designed specifically for aligning long reads contaminated by a high level of errors.2011 days ago
OrthoANI: An improved algorithm and software for calculating average nucleotide identity
...ilarity between two genome sequences. ANI and OrthoANI are comparable algorithms: they share the same species...cut-off at 95~96% and large comparison studies have demonstrated both algorithms to produce near identical rec...1963 days ago
Quick tour of Genetic Algorithms !
...ollection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing genetic algorithms search in both the continuous...1927 days ago
