List of In-silico Binding Site Prediction Tools
...to develop accurate, versatile and efficient binding site prediction algorithms. We have developed a new meth...in predicting catalytic sites and drug binding pockets. Overall, the algorithms and analysis presented here s...3738 days ago
Next generation sequencing in R or bioconductor environment
...environment for efficient sequence management and analysis in R. It contains many speed and memory effective string containers, string matching algorithms, and other utilities, for fas...3618 days ago
Apps for Busy Bioinformatics Researchers !!!
...t;2600 organisms; ‘human’ being the most prevalent. The impact of each SAAS on protein function is predicted using the SNAP and SIFT algorithms and augmented with experiment...3535 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...nalysis of somatic variants in cancer genomes”; integrates four algorithms; written in Perl; required to...update: May 2013; aimed to help study pre-mRNA splicing; combines 12 algorithms to identify mutations’...2902 days ago
Genome Assembly Tools and Software - PART1 !!
...Generation Sequencing data, incorporates cutting-edge technology and algorithms, while also supporting and in...lap/Layout/Consensus (OLC) strategy incorporated with several special algorithms.MAP uses the mate pair inform...2679 days ago
Source Code and Pseudo Code !!
...case-type statement is satisfied by the "switch" statement. Pseudocode is an artificial and informal language that helps programmers develop algorithms. Pseudocode is a "text-based"...2653 days ago
Tools for bacterial whole genome annotation
...mobile elements. PGAP: NCBI has developed an automatic prokaryotic genome annotation pipeline that combines ab initio gene prediction algorithms with homology based methods....2325 days ago
List of visualization tools for network biology
...maps. http://www.ariadnegenomics.com/downloads/ PIVOT Layout algorithms for visualizing protein inter...alysis and visualizations. Scatter plots and dimensionality reduction algorithms https://www.broadinstitute.o...2282 days ago
Python learning resources for bioinformatics and computational biologist !
...CodeCademy Python Composing Programs (3.x) Data Structures and Algorithms in Python - B. R. Preiss...ogramming in Python - Jeffrey Elkner (PDF) Problem Solving with Algorithms and Data Structures using Pyt...2249 days ago
Some useful Bioinformatics links
...quence alignment program https://mafft.cbrc.jp/alignment/software/algorithms/algorithms.html Measuring the distance b...article%26id%3D64:inroduction-to-dot-plots%26catid%3D52:cat_coding_algorithms_dot-plots%26Itemid%3D76 Repea...2235 days ago