Results for "aligned"
Top-level pages
Next generation sequencing in R or bioconductor environment
...Motif Discovery cosmo The cosmo package allows to search a set of unaligned DNA sequences for a shared mo...blication ] PICS The PICS package applies probabilistic inference to aligned-read ChIP-Seq data in order t...3641 days ago
Commercial and public next-gen-seq (NGS) software
...iversity. This version is specifically optimized for the analysis of large numbers (millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model...3535 days ago
Software packages for next gen sequence analysis
...iversity. This version is specifically optimized for the analysis of large numbers (millions) of high-throughput next-generation sequencer reads, aligned to whole chromosomes of model...3259 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...tag-count format. In addition, prealigned data in SAM, BAM or Illumina-...nomes Input: requires BAM files (aligned with GATK) Reference Genome:...rom paired-end reads Input: BAM (aligned in SAMtools API) Output: VCF...eads; requires that raw reads are aligned with BWA Input: BAM Output:...2925 days ago
Genome Assembly Tools and Software - PART1 !!
...hree major stages. First, query sequences are aligned with a reference genome. Seco...rence (or close related reference) genome and aligned paired-end reads to the assem...and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles t...2702 days ago
Understanding BLASTn output format 6 !
...queryqend End of alignment in querysstart Start of alignment in subjectsend End of alignment in subjectqseq Aligned part of query sequencesseq Aligned part of subject sequenceevalu...2155 days ago
List of non-commercial NGS genotype-calling software
...) realSFS http://128.32.118.212/thorfinn/realSFS/ Single-sample Aligned reads Software for SNP and ge...S) estimation Samtools http://samtools.sourceforge.net/ Multi-sample Aligned reads Package for manipulatio...2113 days ago
