Results for "analysis"
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Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) https://pachterlab.github.io/kallisto/ Sailfish Estimation of isoform abundances from reference sequences and RNA-seq data (k-...Tags: Alignment-free, sequence, comparison, tools, next-generation, sequencing, analysis
2368 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large population of input cells Useful for comparative transcriptomics, e.g. samples of the same tissue from different ...Tags: Single, Cell, RNAseq, analysis, tutorial
2348 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data analysis, including experimental design, quality control, read alignment, quantification of gene and transcript levels, visualiza...
Tags: RNAseq, analysis, links
2348 days ago
