Results for "annotation"
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Laj: viewing and manipulating the output from pairwise alignment programs
.... It can display interactive dotplot, pip, and text representations of the alignments, a diagram showing the locations of exons and repeats, and annotation links to other web sites cont...2616 days ago
- ...ome browser, which enables rapid and responsive exploration of bacterial genomes. To use CLgenomics, individual genome data (genome sequences + annotation details) are compiled and sav...
2614 days ago
Prokka: tool for the rapid annotation of prokaryotic genomes
Prokka is a software tool for the rapid annotation of prokaryotic genomes. A typical 4 Mbp genome can be fully annotated in less than 10 minutes on a quad-core computer, and scales well...2611 days ago
- ...annotated with lines in color at specific base-pair locations, or colored base-pair to base-pair regions, with or without other annotation. PhenoGram allows for annotation of chromosomal locations and/...
2610 days ago
ChromHMM: Chromatin state discovery and characterization
...omatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates...ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visuali...2567 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...assembly. An improved version, especially correction Pacfic Bioscience assemblies (PacBio) can be found here. RATT, a tool to transfer the annotation from a reference genome, or a...2544 days ago
NCBI Prokaryotic Genome Annotation Pipeline
NCBI Prokaryotic Genome Annotation Pipeline is designed to annotate...romosomes and plasmids). Genome annotation is a multi-level process that...an automatic prokaryotic genome annotation pipeline that combines a...sp;NCBI Handbook chapter. NCBI's annotation pipeline depends on several i...2540 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...nbsp;DataBase for automated Carbohydrate-active enzyme ANnotation, funded by the BioEnergy...AN provides the capability of automated and comprehensive CAZyme annotation of a given genome submit...2527 days ago
Genome Annotation Transfer Utility (GATU)
Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using geno...es researchers from tedious manual annotation of these sequences. The prog...ther be accepted for/rejected from annotation. GATU can handle multiple-exo...2527 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2495 days ago
