Results for "assembling"
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...ics courses really interesting where they are covering the common algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and pr...3959 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is c...2929 days ago
- _A5-miseq_ is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This...ties are low in all or most reads before 60nt. A5-miseq assumes it is assembling homozygous haploid genomes. U...
2832 days ago
- Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence reads from a mammal-sized genome. In addition to the role of a typical assembler, fe...
2810 days ago
- ...titioning a given reads dataset into a given number of partitions. 2. Assembling each partitions using a pre-s...of the partition (using velvet with kmer value of 31). 5. Finaly, re-assembling the whole dataset with the me...
2729 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces...
2720 days ago
- ...tunities and pitfalls in the finishing process. While genomes can now be sequenced to high redundancy in a cost-effective manner, the process of assembling the genomes is more challengi...
2556 days ago
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
...kbp, and many gaps between contigs can be closed using paired-end placements. Practical issues with the dataset are described, and prospects for assembling larger genomes are discussed.2386 days ago
Oxford Nanopore Sequencing, Hybrid Error Correction, and de novo Assembly of a Eukaryotic Genome
...ction algorithm Nanocorr (https://github.com/jgurtowski/nanocorr) specifically for Oxford Nanopore reads, as existing packages were incapable of assembling the long read lengths (5-50kb...2364 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
...es remains challenging. As a result, there is a shortage of tools for assembling HP genomes from the next generation sequencing (NGS) data. The initial approaches to assembling HP genomes were proposed in t...2342 days ago
