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Results for "bga"

Blogs

• • Arijit@arijit

  

  BGAgenomicsDB: Acaryochloris marina MBIC11017 - A cyanobacterial organim

  ...database system cyanobacterial organims called bgagenomicsDB. Cyanobacteria or some time called blue gree algee(BGA) is found in almost every ter...Want to know more about this organism visit : bgagenomics.iicb.res.in  ...

  3086 days ago

Wire posts

• • Jit@jit.aber

  

  #Zero coverage regions ~/Tools/bedtools2/bin/bedtools genomecov -ibam PvsH_aln_sorted.bam -bga | awk '$4==0' > ZERO_coverage_regions.txt

  2154 days ago

• • Abhimanyu Singh@abhimanyu

  

  #Intersect your bed data with coverage $ bedtools genomecov -ibam aln.bam -bga | awk '$4==0' | bedtools intersect -a cds.bed -b - -f 1.0

  2008 days ago

Bio-Scripts

• • Neelam Jha@neelam

  

  Genome Covered !

  zero=$(bedtools genomecov -ibam BAM -g hg38.fasta -bga | awk '$4==0 {bpCountZero+=($3-$2)} {print bpCountZero}' | tail -1) nonzero=$(bedtools genomecov -ibam BAM -g hg38.fasta -bga | awk '$4>0 {bpCountNonZero+=($3-$2)} {print bpCountNonZero}' | tail -1) percent=$(bc

  2220 days ago