Results for "binary files"
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Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map...ery large grids. Input parameters' arguments may be specified in separate files. This is particularly conveni...2787 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a comman...
2778 days ago
- Visualization has played an extremely important role in th...(Supplementary Note 3). In addition to SAM and BAM files with long, short, or paired-end reads, Ribbon can also load coordinate files from whole genome aligners su...
2767 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing librarie...sample (single or paired-end sequence reads). When HybPiper generates sequence files from the reads, it does so in...
2753 days ago
- Background. Next-generation sequencing technologies are now producing multiple times...ftware. More at https://sourceforge.net/projects/record-genome-assembler/files/
2732 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contig...
2719 days ago
- fqtools is a software suite for fast processing of FASTQ files. Various file manipulations a...ake either a single file or a pair of files as input. If no input file is...ta, either a single file or a pair of files will be generated. If no ...
2719 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pd...gz | fastaAllSize > mysequences.stat Substitute fastqAllSize for fastq files. ./permute.sh mysequences&nb...2718 days ago
Understanding Greedy Algorithms
Learning greedy algo for biologist. https://www.topcoder.com/community/data-sc...emblyClass/01.%20Assembly%20Intro.pdf http://lsl.sinica.edu.tw/Services/Class/files/20150612449.pdf http://www.c...2715 days ago
- caffMatch is a novel scaffolding tool based...to contigs (instead of providing .sam files). The arguments accepted by...his is the directory where ScaffMatch files are stored. These are .sam fi...use this option if you provide reads files; -1) (Comma separated...
2714 days ago
