Results for "binary files"
Bio-Scripts
Install Python locally on shared Linux server !
#Install python to local directory #Firstly, I create a folder in my home directory, download the python source an...run this command: which python #it should show you the path to the python binar...2112 days ago
- ...he breakpoints of two segment files and annotate the resulting int...t intervals into sub-interval files. -------------------------...nverts a BAM file into a BFQ (binary fastq formatted) file B...Sorts one or more VCF files. SplitVcfs (Picard)...
2089 days ago
- ➜ upgrade_oh_my_zsh Updating Oh My Zsh remote: Counting objects: 484, done. remote...2 +- tools/theme_chooser.sh | 2 +- 140 files changed, 1710 insertions(+),...
2088 days ago
- library(vcfR) # Input the files. vcf
2074 days ago
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2069 days ago
Generate simulated polyploid genome !
#Generate 3% divergence msbar -point 4 -count 16558 toy.fasta > toyheterozygous3percent.fasta #Cat both files cat toy.fasta toymutated3pe...2067 days ago
- ➜ Tools git:(master) ✗ wget https://github..../cram/cram_structs.h htslib-1.9/cram/files.c htslib-1.9/cram/mFILE.c h...s.c gcc -g -Wall -O2 -I. -c -o cram/files.o cram/files.c gcc -g -Wall...cc -g -Wall -O2 -I. -fpic -c -o cram/files.pico cram/files.c gcc -g -Wa...
2033 days ago
Installing Platypus on Ubuntu !
(py27) ➜ Tools git:(master) ✗ git clone htt...(Reading database ... 501922 files and directories currently ins...s.c gcc -g -Wall -O2 -I. -c -o cram/files.o cram/files.c gcc -g -Wall...cc -g -Wall -O2 -I. -fpic -c -o cram/files.pico cram/files.c gcc -g -Wa...2033 days ago
- $ sudo apt-get install rakudo [sudo] password for jit: Reading package lists... D...g previously unselected package libjs-angularjs. (Reading database ... 185114 files and directories currently ins...
1565 days ago
Split the multifasta in separate files !
cat Avaga_allPalindrome.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'1971 days ago
