Results for "blast"
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CBS Comparative Microbial Genomics group - BioTools download page
...represented by 31 genomes including 10 genera. The analyses include 16S rRNA phylogeny, basic DNA and codon statistics, proteome comparisons using BLAST and graphical analyses of DNA...2080 days ago
S-plot2: creates an interactive, two-dimensional heatmap of sequences
...aryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes functionality to extract, analyze, and automate BLAST queries of regions of interes...2043 days ago
S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences
...aryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes functionality to extract, analyze, and automate BLAST queries of regions of interes...2039 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an overview...2011 days ago
RepeatMasker compatible blast tool
RMBlast is a RepeatMasker compatible version of the standard NCBI blastn program. The primary differe...addition of a new program "rmblastn" for use with RepeatMasker a...ry features to the stock NCBI blastn program. These include: S...tps://anaconda.org/bioconda/rmblast1973 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignm...rch protein or DNA databases. BLAST is best used for sequence sim...yield different results from BLAST, and may be useful for motif...w of BLAST, see the NCBI BLAST Course. Additional informatio...penalty for a mismatch in the blast portion of run [integer] def...1970 days ago
genoPlotR - plot gene and genome maps project!
...lows the user to read from usual format such as protein table files and blast results, as well as home-made...(like Artemis, for example) Reads from common formats: Genbank, EMBL, blast, Mauve, and from user-generat...1968 days ago
- ...nment of KEGG GENES using SSEARCH computation. BlastKOALA and GhostKOALA assign K numbers to the user's sequence data by BLAST and GHOSTX sea...in KEGG Pathogen are special interfaces to the BlastKOALA server and can be execut...
1968 days ago
- ...me sequencing service facility.Our approach first determines a subset of transcripts that are suspiciously similar across samples using a pairwise BLAST procedure. CroCo then combine...
1942 days ago
TwinBLAST: When Two Is Better than One
TwinBLAST is a web-based tool for viewing 2 BLAST reports simultaneouslyside-by-side. It uses...ioPerl (www.bioperl.org) is used to indexraw BLAST reports and Bio::Graphics is used to draw pictograms of the BLASThits. https://github.com/IGS/...1699 days ago
