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Results for "
calculation
"
Bio-Scripts
Poonam Mahapatra
@poonam
Perl script to calculate N50
...collection of sequences in a fasta file ### Input : A fasta sequence file and the minimum length of sequence to consider it for the N50
calculation
### Output : None. The...
2709 days ago
Shruti Paniwala
@shruti
QV
calculation
in Bash !
# $1 = vcf file # $2 = input bam file # $3 = output QV file module load samtools NUM_BP=`samtools depth $2 | perl -e '$c = 0; while(){chomp; @s = split(/\t/); if(...
1610 days ago