2714 days ago
2703 days ago
ConPADE: Genome Assembly Ploidy Estimation from Next-Generation Sequencing Data
...rors in sequencing. The method can be used for whole genome shotgun (WGS) sequencing data. They also show applicability of the method for variant calling and allele dosage estimation....2628 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...r Unique Molecular Identifiers, or UMIs, for DNA-, RNA- and small-RNA-Seq. UMI support in Strand NGS is end-to-end, spanning alignment to variant calling in DNA-Seq, and alignment to...2387 days ago
2608 days ago
Pacbio Long Reads Compatible Software and Tools
...data? Email us. Software categories: De novo assembly Structural Variations Detection Reference-based alignment Consensus and variant calling RNA analysis Epigenetic bas...2608 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
simNGS is software for simulating observations from Illumina sequencing machines using the statistical models behind the AYB base-calling software. By default, observations only incor...2350 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference mat...2327 days ago
2208 days ago
Ranbow: a haplotype assembler for polyploid genomes
...an also be applied to other polyploid genomes. After a first phasing, Ranbow utilizes the assembled haplotypes to improve the accuracy of variant calling results and to infer the evol...2165 days ago