ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivaria...Tags: Bioinformatics, ChromHMM, Chromatin, Discovery, Characterization, Chromosome
2712 days ago
Tags: RAMI, tool, identification, characterization, phylogenetic, clusters, microbial, communities
2601 days ago
NanoSim: nanopore sequence read simulator based on statistical characterization.
NanoSim, a fast and scalable read simulator that captures the technology-specific features of ONT data and allows for adjustments upon improvement of nanopore sequencing technology. The first step of NanoSim is read characterization, which provides a comprehensive alignment-based analysis and gen...Tags: NanoSim, nanopore, sequence, read, simulator, statistical, characterization
2469 days ago
Tags: TAREAN, Computational, tool, identification, characterization, satellite, DNA, unassembled, short, reads
2321 days ago
NucDiff: In-depth characterization and annotation of differences between two sets of DNA sequences
NucDiff locates and categorizes differences between two closely related nucleotide sequences. It is able to deal with very fragmented genomes, structural rearrangements and various local differences. These features make NucDiff to be perfectly suitable to compare assemblies with each other or wit...Tags: NucDiff, In-depth, characterization, annotation, differences, DNA, sequences
1599 days ago
Proksee: in-depth characterization and visualization of bacterial genomes
Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file.Tags: Proksee, in-depth, characterization, visualization, bacterial, genomes
500 days ago