RNA-Seq De novo Assembly Using Trinity
...nscripts for a dominant isoform, but then reports just the unique portions of alternatively spliced transcripts. Chrysalis clusters the Inchworm contigs into clusters and constructs complete de Br...2964 days ago
2893 days ago
2879 days ago
VirtualFlow: a versatile, parallel workflow platform for carrying out virtual screening
related tasks on Linux-based computer clusters of any type and size which are managed by a batchsystem (such as SLURM). Currently, there exist two versions of Virtual...1421 days ago
2689 days ago
2490 days ago
2462 days ago
orthodotter: Synteny plots (oxford grid)
...------ orthodotter -f Vigne_Banane.ortho -toPlot Vigne:Banane:black:1=10,5 -x 1200 -y 1200 -bg white -o Vigne_vs_Banane.png > Vigne_vs_Banane.clusters ----------------------------...2460 days ago
simNGS and simLibrary – Software for Simulating Next-Gen Sequencing Data
...ing and do not incorporate effects from more esoteric sources of noise that may be present in real data ("dust", bubbles, merged clusters, sequence-heterogeneous clusters, etc). Many of these addition...2349 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...large datasets by utilizing lightweight data structures and multi-threaded parallelization, allowing to assemble human-sized genomes on commodity clusters in under a day. The process p...2327 days ago