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• • Jit@jit.aber

  

  Detect the sequence pattern and its location in fasta file with match and mismatches information.

  This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl

  3881 days ago

• • Jit@jit.aber

  

  Clean the FASTA file

  Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.  

  3879 days ago