BOL: Detect the sequence pattern and its location in fasta file with match and mismatches information.

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Detect the sequence pattern and its location in fasta file with match and mismatches information.

Detect the sequence pattern and its location in fasta file with match and mismatches information.

By Jit 4104 days ago

Centromere
AI
Perl
Pattern
Regular Expression
Extract Region

This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line ..

To run:

perl centro.pl

BOL

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Detect the sequence pattern and its location in fasta file with match and mismatches information.