Results for "command"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...or, BMC Bioinformatics 11(Suppl 12):S1, 2010 Full Text Links to Linux command-line tutorials and resources...e Barnett's awk tutorial Greg Goebel's awk tutorial Executing an awk command from R to simplify data explo...3792 days ago
List of In-silico Binding Site Prediction Tools
...n pocket (cavity) detection algorithm based on Voronoi tessellation. It was developed in the C programming language and is currently available as command line driven program. A GUI is...3757 days ago
Perl one-liner for bioinformatician !!!
...rl-oneliners-for.html http://genomespot.blogspot.com/2013/08/a-selection-of-useful-bash-one-liners.html http://biowize.wordpress.com/2012/06/15/command-line-magic-for-your-gene-anno...3641 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call...
3562 days ago
- ...=x2.fq out=y.fq Note - you can actually use a shortcut if paired read files have the same name with a 1 and a 2. This is equivalent to the above command: reformat.sh in=x#.fq out=y.f...
2726 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...of SRA and other NCBI resources; command-line or via web, can fetch da...glfMultiples Description: command-line, variant caller Input:...ailored to Oxford Nanopore Reads; command line program Input: FASTQ R...Trait Analysis; package program, command line interface; estimates var...2921 days ago
- Linux Commands Cheat Sheet File System&...sh; edit file alias name 'command' — create an alias for a command System ...files with .ext extension command | grep pattern — search...
2887 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
...t Clustering based on Functional annotation GeneSCF serves as command line tool for clustering the...ysis in real-time (v1.1 and above) by accessing source databases. With command-line versions of tools, as yo...2884 days ago
- ...rence genome. See also BAM Format. SAMtools: widely used, open source command line tool for manipulating SA.../BAM files. The SAMtools distribution also includes bcftools, a set of command line tools for identifying an...
2882 days ago
Genome Assembly Tools and Software - PART1 !!
...o one contig. assemblyManager – Computing the Robotic Commands for 2ab Assembly Clotho p...excellent results both on bacterial en eukaryotic datasets. The command-line Perl script and addition...2698 days ago
