2536 days ago
2486 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
...BLAST combines the accuracy and general applicability of BLAST with computational efficiency, accessibility, an...so that NGS data can be analyzed efficiently even when only modest computational resources are available. htt...2471 days ago
Sequence - Evolution - Function; Computational Approaches in Comparative Genomics
Sequence - Evolution - Function is an introduction to the computational approaches that play a critical ro...ches of functional genomics and of the potential and limitations of computational and experimental approaches t...2459 days ago
Opera: An optimal genome scaffolding program
...Gao, Wing-Kin Sung, Niranjan Nagarajan. Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequences. Journal of Computational Biology, Sept. 2011, doi:10.1...2346 days ago
Computational Genomics: Applied Comparative Genomics
...s for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses. We will study the leading computational and quantitative approaches f...2344 days ago
2344 days ago
Protein Subcellular Localization Prediction
...ion to a protein is an important step towards elucidating its interaction partners, function, and potential role(s) in the cellular machinery. Computational tools offer an attractive com...2252 days ago
2177 days ago
NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data
NextSV, a meta SV caller and a computational pipeline to perform SV calling from low coverage long-read sequencing data. NextSV integrates three aligners and three SV callers and generat...2093 days ago