Results for "copies"
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...for reading/writing high-throughput sequencing data Samtools and BCFtools both use HTSlib internally, but these source packages contain their own copies of htslib so they can be buil...2621 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...nce a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and paralogous copies in all the other sequenced me...2373 days ago
“One code to find them all”: a perl tool to conveniently parse RepeatMasker output files
...uantitative information. Assemble RepeatMasker hits into complete TE copies, including LTR-retrotransposo...asta files Compute summary statistics for each TE family (number of TE copies, genome coverage...) Ambiguo...2175 days ago
- KAD is designed for evaluating the accuracy of nucleotide base quality of genome assemblies. Briefly, abundance of k-mers are quantified for both sequencing reads and a...
1429 days ago
PaReBrick: PArallel REarrangements and BReaks identification toolkit
.... The tool provides diagrams of the neighbors for each block of interest, allowing the detection of horizontally transferred blocks or their extra copies and the inversions in which c...953 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
...nce a query gene has been entered, it is displayed in its genomic context in parallel to the genomic context of all its orthologous and paralogous copies in all the other sequenced me...809 days ago
homologizer: Phylogenetic phasing of gene copies into polyploid subgenomes
...his tutorial describes the usage of homologizer to phase gene copies into polyploid subgenomes. Th....G., and C.J. Rothfels. 2022. Homologizer: phylogenetic phasing of gene copies into polyploid subgenomes.&nb...350 days ago
