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NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
...ds. The decector will break a contig at the site of an identified misassembly and will generate a new fasta file containing both the corrected contigs and the correct, unaffected contigs. https:/...1941 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
...nbsp;assembler for TGS long reads. It uses a "correct-then-assemble" strategy simil...h. NextDenovo contains two core modules: NextCorrect and NextGraph. NextCorrect ca...can be used to construct a string graph with corrected reads. It also contains a m...1596 days ago
Tadpole: an assembler, error-corrector, and read-extender
...embler, with additional capabilities of error-correcting and extending reads. It do...adpole is very conservative and optimized for correctness rather than length; which...t currently do scaffolding. To error-correct reads:tadpole.sh in=reads.fq...1565 days ago
MEC: Contig Misassembly Correction
MEC, to identify and correct misassemblies in contigs. Firstly, MEC takes fragment coverage as the feature to detect the candidate misassemblies. Then, it can distinguish a large...1565 days ago
Apollo: A Sequencing-Technology-Independent, Scalable, and Accurate Assembly Polishing Algorithm
Apollo is an assembly polishing algorithm that attempts to correct the errors in an assembly. It can take multiple set of reads in a single run and polish the assemblies of genomes of...1524 days ago
RagTag: a collection of software tools for scaffolding and improving modern genome assemblies
RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: Homology-based misassembly correction Homology-based assembly scaffolding and patching Scaffold merging981 days ago
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