Results for "cost"
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Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
...have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while ac...1150 days ago
- ...ment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using a cost function. The cost function can be defined by th...
1096 days ago
Alignment of closely related whole genomes/scaffolds
With the relative ease and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of lif...3023 days ago
- ...doreads and uses the resulting contigs to generate a modified reference sequence. In this way, it can very quickly, and at no additional sequencing cost, generate new, modified refer...
2722 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics: we are able to produce huge amounts of data at an incredibly low cost compared to Sanger sequencing. Despite this, some old p...2698 days ago
FSA: Fast Statistical Alignment
...constraints. FSA is capable of aligning hundreds or even thousands of sequences using a randomized inference algorithm to reduce the computational cost of multiple alignment. This r...2649 days ago
- ...logies has come with its own set of opportunities and pitfalls in the finishing process. While genomes can now be sequenced to high redundancy in a cost-effective manner, the process...
2546 days ago
Omega2: metagenome assembly pipeline
...table. The overlap graph of reads was simplified by removing transitive edges and trimming short branches. Unitigs were generated based on minimum cost flow analysis of the overlap...2495 days ago
QuorUM: An Error Corrector for Illumina Reads
Illumina Sequencing data can provide high coverage of a genome by relatively short (most often 100 bp to 150 bp) reads at a low cost. Even with low (advertised 1%) error rate, 100 &t...2374 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...ue, identity, coverage, alignment length, etc.), Does not require any additional hardware, since it is a software solution. It is easy to install, cost-effective, takes full advanta...2351 days ago
