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Results for "count"

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  • Rahul Nayak

    perl -nle '$count += () = /XY[0-9]+/g; END {print $count}' inputfile #Count #Perl #Perloneliner

    Tags: Count, Perl, Perloneliner

    3656 days ago

  • Jit

    Count the total number of lines in a file. my $total=@{[<INFILE>]}; #Perl #Count #Number #Total #File

    Tags: Perl, Count, Number, Total, File

    3626 days ago

  • Jit

    Count the number of "pattern" occurrence in a file grep -o 'pattern' anc.annots.gff | wc -l #Linux #grep #Count #Number #Occurrence

    Tags: Linux, grep, Count, Number, Occurrence

    3625 days ago

  • Jit

    Count the number of occurrence of pattern in a file using Perl. perl -e '$_ = <>; print scalar ( () = m/needle/g ), "\n"' #Perl #Perloneliner #Count #Occurrence

    Tags: Perl, Perloneliner, Count, Occurrence

    3625 days ago

  • Jit

    To count number of fasta entries, I use: grep -c '^>' mySequences.fasta #Perl #Count #Number #Fasta #Linux #Grep

    Tags: Perl, Count, Number, Fasta, Linux, Grep

    3585 days ago

  • Rahul Nayak

    Count the number of sequences in fastaq file. grep -c '^@' sample1.fq #Fastaq #Count #Number #Grep #Dirty #Oneliner #NGS

    Tags: Fastaq, Count, Number, Grep, Dirty, Oneliner, NGS

    3170 days ago

  • Poonam Mahapatra

    How to count the occurance of letters in fasta file?

    I received a new genome to annotated. I need your help to quickly count the occurance of all the letters in fasta file.

    Tags: Fasta, Count, Letters, ATGC, N, Others, Script

    2974 days ago

  • Rahul Nayak

    Count the number of bases in fasta file. grep -v ">" file.fasta | wc | awk '{print $3-$1}' #Fasta #Count #Bases

    Tags: Fasta, Count, Bases

    2517 days ago

  • Aaryan Lokwani

    Count the contigs length in index fasta file with samtools. $ awk '{s+=$2}END{print s}' scaffolds.fasta.fai #Fasta #Index #Length #Count #Size #Samtools

    Tags: Fasta, Index, Length, Count, Size, Samtools

    2153 days ago

  • Jit

    EyeChrom: Visualizing Chromosome Count Data From Plants

    It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database. note: Report an issue via Gihub: github.com/roszenil/CCDBcurator and github.com/RodrigoRivero/EyeChrom https://bsapubs.onlinelibrary.wiley.com/doi/...

    Tags: EyeChrom, Visualizing, Chromosome, Count, Data, From, Plants

    1953 days ago

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