Results for "counts"
Comments
...p;kallisto h5dump can be used to output an HDF5 file to plaintext. The first line contains a header for each column, including estimated counts, TPM, effective length. run_...1365 days ago
Comment on "Estimate Genome Size"
...ads2.fastq.gz | jellyfish count -m 31 -o fastq.counts -C -s 10000000000 -U 500 -t 3...# generate a histogram jellyfish histo fastq.counts_0 > fastq.counts_0.histo...inpoint the actual peak find_valleys.pl fastq.counts_0.histo # estimate the size...1902 days ago
- ...eriment design, process optimization and quality control before computational analysis. Essentially, provides three types of quality control: read counts (such as duplicate reads, map...
2141 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...top score will be counted for ambiguity (mapping quality). Value of 0.0 counts only identical mappings. [0.0...y high error rates). [false] --min-bin-perc FLT Consider only bins with counts above FLT * max_bin, where ma...2296 days ago
Comment on "RPKM normalization - Perl"
...a.pl sample_count_test.count 2:9 28 > sample_count_test.rpkm Colum1 in the input matrix is gene name, column 2 to 9 samples with corresponding counts and column 28 is length of ea...2876 days ago
