RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew Univers...f transcriptomes from RNA-seq data. Trinity combines three indep...inity partitions the sequence data into many individual de Bruij...nchworm assembles the RNA-seq data into the unique sequences of...directory. Assemble RNA-Seq data like so:...2963 days ago
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PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements).PhyloGrapher is a...2949 days ago
2949 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
Paired End: java -jar trimmomatic-0.35.jar PE -phred33 input_forward.fq.gz input_reverse.fq.gz output_forward_paired.fq.gz output_forward_unpaired.fq.gz output_reverse_pa...2940 days ago
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HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowl...oring sequencing files (your own data or from public sources) Chec...SAM/BAM alignment files Visualizing data in a genome browser RNA-Se...ng R/Bioconductor General Tips for Data Analysis...2929 days ago
MEDEA: Comparative Genomic Visualization with Adobe Flash
As the number of sequence and annotated genomes grows larger, the need to understand, compare, and contrast the data becomes increasingly importan...ot outliers is necessary in such large and complex data sets. M...2929 days ago