Results for "dataset"
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List of In-silico Binding Site Prediction Tools
...it/LigASite/index.php?home is a gold-standard dataset of biologically relevant bind...y PISA (3) are used for all structures in the dataset. PDBeMotif: http://www.ebi.a...rate. All these methods are evaluated on two datasets of 48 unbound/bound structur...3760 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...dules (kissnp2 and kissreads) Input: raw NGS datasets; fasta, fastq, gzipped or no...heterogeneity from high-throughput sequencing datasets; calls variants found in <...elationships; “There are four different datasets: training, validation, testi...2925 days ago
Genome Assembly Tools and Software - PART1 !!
...cing technologies. It can combine datasets produced by different techno.... However, assembling metagenomic datasets has proven to be computation...of distinct genomic k-mers in the dataset, and returns the k-mer length...A – Assembly of Metagenomic Datasets MetaCAA is a sequence-ass...2702 days ago
- ...quired for IonTorrent data --test runs SPAdes on toy dataset -h/--help prin...disables repeat resolution stage of assembling Advanced options: --dataset <filename> f...
2367 days ago
Ancestral sequence reconstruction steps !
...Alignments "Mafft - http://mafft.cbrc.jp/alignment/software/source.html" mafft --maxiterate 1000 --reorder --thread 24 --genafpair Dataset.fasta > Dataset_Alig.fasta 2- Your d...2195 days ago
Parallel Processing with Perl !
...rmatics we need to deal with huge datasets which are more than 10...we have 500 million lines in the dataset it takes more than a day to i...o this step 1 : split the dataset equally according to number o...(Should take about 3hrs for 100Gb dataset) and then export the whole ta...2096 days ago
