Results for "de Bruijn"
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Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search...3603 days ago
RNA-Seq De novo Assembly Using Trinity
...seq reads. Trinity partitions the sequence data into many individual de Bruijn graphs, each representing the...clusters the Inchworm contigs into clusters and constructs complete de Bruijn graphs for each cluster. Each...2965 days ago
GATB : Genome Analysis Toolbox with de-Bruijn graph
The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of...2929 days ago
- ...es sequencing machines. Publication: L. Salmela, R. Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs. Accepted to RECOMB-Se...
2166 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a deskto.... Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet). Do...
2705 days ago
- ...ger reads. In contrast, real genomes often have long repetitive regions, and they are hard to assemble using overlap-consensus-layout approach. De Bruijn graph-based assembly approach...
2693 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
...species, on a usual computing server, and even works on desktop/laptop computers. It adopts a novel graph based approach: it builds a succinct De Bruijn Graph (DBG) representing the...2582 days ago
Omega2: metagenome assembly pipeline
...minimum cost flow analysis of the overlap graph and then merged to contigs and scaffolds using mate-pair information. In comparison with three de Bruijn graph assemblers (SOAPdenovo,...2491 days ago
dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.
...mbling HP genomes were proposed in the pre-NGS era and are not well suited for NGS projects. To address this limitation, we developed the first de Bruijn graph assembler, dipSPAdes, f...2327 days ago
Rectangle Graph for Repeat Resolution in Genome Assembly
...er genome assemblers if they use the graph format as SPAdes files. For more details see: Nikolay Vyahhi, Son K. Pham, Pavel Pevzner. From de Bruijn Graphs to Rectangle Graphs fo...2320 days ago
