Results for "de novo"
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Fermi is a de novo assembler with a particular focus on assembling Illumina short sequence...impson and Durbin, 2010 and 2012) and has a similar workflow.As a typical de novo assembler, fermi tends to pro...2792 days ago
- VALET is a pipeline for performing de novo validation of metagenomic assemblies. VALET checks a number of properties that should hold true for a correct assembly (e.g.,...
2779 days ago
- ...SOLiD. ART can be used to test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure v...
2737 days ago
- ...closely related to the reference genome (e.g., mutants of the same species) directly from the reads used in the experiment. Our approach applies de novo assembly software to experime...
2715 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed repres...
2702 days ago
- ...sert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the process involved in producing a de novo assembly from Illumina r...
2701 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no individual assembler guarantees the optimal assembly for diverse species. Opt...2695 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...requires minimal programming skills. High-quality prokaryotic genome assembly and annotation can be obtained with ease. It performed better than de novo assemblers and contig integra...2695 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...ld problems have become even more difficult, de novo assembly being on top of this...te efforts to design tools able to assemble, de novo, an organism sequenced with s...ly related reference. The idea is to combine de novo and reference-guided assembly...2691 days ago
- ...ancy will likely break the synteny. pyScaf works better with contigs than scaffolds, as scaffolds are often affected by mis-assemblies (no de novo assembler / scaffolder i...
2691 days ago
