Results for "de novo assembly"
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Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequen...analysis. Visualization and quality assessment of de novo gen...2824 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic...structure of hundreds of genes. We present novel methods for the systematic de novo ide...2746 days ago
- ...edundans pipeline assists an assembly of heterozygous genomes.P...nbsp;scaffolded homozygous genome assembly, that should be less fra...e gaps resulting from genome assembly or scaffolding more deta...t contigs from an initial de novo assembly scaffolding: joini...
2816 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/l...ermediate contigs/scaffolds assembled in a genome assembly project, in a process known a...2808 days ago
- Fermi is a de novo assembler with a particular focus o...a similar workflow.As a typical de novo assembler, fermi tends to pro...or weakness of fermi is the high misassembly rate. Although fermi pro...sp;generates a Makefile. The actual assembly is done by invoking make. Pre...
2808 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with l...er and petitioning to various government agencies. The tasks of sequencing and assembly were handled by dedicated seq...
2811 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake...produce a realistic assessment of genome assembly software in a rapidly changin...ical evaluation of genome assemblies and assembly algorithms. http://genome.cs...2810 days ago
- ...a pipeline for performing de novo validation of metagenomi...at should hold true for a correct assembly (e.g., mate-pairs are aligned...t distance from each other in the assembly, the depth of coverage is fai...te of the likelihood a particular assembly is correct. Home Page:...
2795 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circu...comparisons between a large number of genomes, with a focus on handling genome assembly data. The application is avai...2787 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized enviro...me or similar species. Such classification is a useful prerequisite for genome assembly and for analysis of the biolo...
2777 days ago
