Results for "de-novo assembly"
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Resolving the complexity of the human genome using single-molecule sequencing
The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps remai...3222 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo...mber of missing, duplicated and single BUSCO genes within the assembly. HapSolo performs hill climbi...
1094 days ago
- Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
1093 days ago
- Assessing genome assembly and annotation completeness with Benchmarking Universal Single-Copy Orthologs More at http://busco.ezlab.org/
3011 days ago
- RATT is software to transfer annotation from a reference (annotated) genome to an una...ome. It was first developed to transfer annotations between different genome assembly versions. However, it can als...
3011 days ago
- Convenient conversions between genome assemblie. The liftover package makes it easy to remap genomic coordinates to a different genome assembly. More at https://github.com/aaronwolen/liftover https://www.bioconductor.org/help/workflows/liftOver/
3010 days ago
- CrossMap is a program for convenient conversion of genome coordinates (or annotation files) between different assemblies (such as Human hg18 (NCBI36) <> hg19 (GRCh...
3010 days ago
- flo - same species annotations lift over pip...sferring annotations from one genome assembly to another. Usually lift over...ause there is a new, improved genome assembly for the species and good qual.... The idea is simple: align the new assembly with the old one (e.g., with...
3008 days ago
- Although centromeres are essential for life and are the subject of extensive research...Hi-C has been re-purposed for diverse applications, including de novo genome assembly, deconvolution of metagenomic...
3006 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the efficient and robust de novo reconstruction of transc...2966 days ago
