Results for "de-novo assembly"
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Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous seq...2812 days ago
Method in Comparative genomics !!
We present methods for the automatic determination of genome correspondence. The algorithms enabled the automatic identification of orthologs for more than 90% of genes...2735 days ago
- Redundans pipeline assists an assembly of heterozygous genomes.Program takes as inp...nd returns scaffolded homozygous genome assembly, that should be less fra...sp;close the gaps resulting from genome assembly or scaffolding more deta...
2804 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/l...ermediate contigs/scaffolds assembled in a genome assembly project, in a process known a...2796 days ago
- Fermi is a de novo assembler with a particular focus on as...owever, the major weakness of fermi is the high misassembly rate. Although fermi pro...l script. It generates a Makefile. The actual assembly is done by invoking make. Pre...
2796 days ago
- These tutorials are written for hundreds of bioinformaticians trying to cope with lar...r and petitioning to various government agencies. The tasks of sequencing and assembly were handled by dedicated seq...
2800 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We have organized this "bake...produce a realistic assessment of genome assembly software in a rapidly changin...ical evaluation of genome assemblies and assembly algorithms. http://genome.cs...2798 days ago
- VALET is a pipeline for performing ...that should hold true for a correct assembly (e.g., mate-pairs are aligned...rect distance from each other in the assembly, the depth of coverage is fai...imate of the likelihood a particular assembly is correct. Home Page:...
2783 days ago
BLAST Ring Image Generator (BRIG)
BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circula...omparisons between a large number of genomes, with a focus on handling genome assembly data. The application is avai...2775 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharacterized environm...e or similar species. Such classification is a useful prerequisite for genome assembly and for analysis of the biolo...
2765 days ago
