Results for "de-novo assembly"
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Visualization has played an extremely important role in the current genomic revolutio...m whole genome aligners such as MUMmer. Therefore, Ribbon can be used to test assembly algorithms or inspect the sim...2754 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing rea...r next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation...
2741 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by SourceForge.net. The project page is availab...2722 days ago
- Background. Next-generation sequencing technologies are no...ed in the experiment. Our approach applies de novo assembly software to experimental read...sequences RECORD outperforms more general assisted-assembly software. More at https...
2719 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will a...https://github.com/aalokaily/Hierarchical-Genome-Assembly-HGA...
2715 days ago
- SWALO (scaffolding with assembly likelihood optimization) is a method for scaffolding based on likelihood of genome assemblies computed using generative models for sequencing. Download Git repository of SWALO is at https://github.com/atifrahman/SWALO.
2714 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed re...
2706 days ago
Standardized velvet assembly report
Requirements: velvet (velveth velvetg should be in your PATH) R (with Sweave) pd...es (leave out the .fa) https://github.com/leipzig/standardized-velvet-assembly-report2705 days ago
- The objective of this activity is to help you understand how to run&nbs...lvet, and the process involved in producing a de novo assembly from Illumina reads. http://evomics.org/learning/assembly-and-alignment/velvet/
2705 days ago
CISA: Contig Integrator for Sequence Assembly
A plethora of algorithmic assemblers have been proposed for the de novo assembly of genomes, however, no indiv...ual assembler guarantees the optimal assembly for diverse species. Optimizi...n order to generate the most optimal assembly. However, few efforts have be...2699 days ago
