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Public Databases for Bioinformatics !
...storage wotan: Bickel and SGE server 64 AMD core 256GB RAM 200GB of SSD storage 12TB RAID5 local storage Filesystem: /users/$USER default home directory full backups...1154 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...also presents a significant improvement over the state-of-the-art for PacBio read mappers. GraphMap was also designed for ease-of-use: the default parameters can handle a...3239 days ago
- ...s using BUSCO scores and then distinguishes among candidate assemblies using a cost function. The cost function can be defined by the user but by default considers the number of missi...
1107 days ago
Painless package development for R
...ure, adding efficient tools to support the cycle of package development. With devtools, developing a package becomes so easy that it will be your default layout whenever you’re...2939 days ago
- ...s Taxon ID. The performance will vary widely depending on the number of outputs and the options selected. Conversions to a single output with the default options should complete in a...
2908 days ago
- ...rectly assigned to a taxon within the NCBI taxonomy by comparing it to a reference database containing microbial and viral protein sequences. By default, Kaiju uses either the availa...
2883 days ago
- ...s than the value of this argument are discarded. Optional argument, by default it is equal to 5; -g)... -l) Log file - where to store the logs. Optional argument. By default, stdout is used....
2714 days ago
splitbam: splits a BAM by chromosomes
...CHROM__.bam -R ref.fasta (bam|sam|stdin) Options -h help; This screen. -R (indexed reference file) REQUIRED. -u (unmapped chromosome name): default:Unmapped -e | --empty : gene...2637 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
.... Consistently very high sensitivity and precision across different error profiles, rates and sequencing technologies even with default parameters. ...2539 days ago
Perlbrew: admin-free perl installation management tool.
...perlbrew or /usr/local/bin/perlbrew. For all users who want to use perlbrew, a prior perlbrew init needs to be executed. The default perlbrew root directory is&nb...2504 days ago
