Useful Publications and Websites for Deep Sequencing Data Analysis
...6, 2010. PubMedCentral [Geoseq is a web service that allows searching deep sequencing datasets with a reference sequence of a gene of interest] Detecting and annotating genetic variat...3779 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...im to reconstruct different isoforms and alternate splicing from RNA-Seq data http://cbil.upenn.edu/beers/BOTTLENECK Bottleneck is a program for detecting recent effective population s...3737 days ago
List of In-silico Binding Site Prediction Tools
...uchicago.edu/). The pairwise alignment of the unbound and split-pocket fragments is superimposed to evaluate the local structural similarity for detecting the unbound split characteris...3744 days ago
Next generation sequencing in R or bioconductor environment
...t of genomic regions as input and outputs short DNA sequences that are overrepresented in some part of the list. The algorithm was developed for detecting transcription factor (TF) bin...3624 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...likelihood model Input: BED or VCF files from GATK Output: two VCF files (one for SNVs, one for Indels) Scalpel Description: Used for detecting indels in a reference genome;...2909 days ago