GMOL: An Interactive Tool for 3D Genome Structure Visualization
GMOL was developed based upon our multi-scale approach that allows a user to scale between six separate levels within the genome. With GMOL, a user can choose any unit at any scale and scale it up or down to visualize its structure and retrieve corresponding genome sequences.2231 days ago
EWAS: epigenome-wide association study software 2.0
...tion between epigenetic variations and disease/phenotype. On the basis of EWAS1.0, we have added more distinctive features. EWAS2.0 software was developed based on our “populatio...2231 days ago
MITObim - mitochondrial baiting and iterative mapping
...et al. 2013. The full article can be found here. Kindly cite the article if you are using MITObim in your work. The pipeline was originally developed for Illumina data,...2183 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana Uni...e-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicl...2183 days ago
Ranbow: a haplotype assembler for polyploid genomes
Ranbow is a haplotype assembler for polyploid genomes. It has been developed for the haplotype assembly of the hexaploid sweet potato genome, which is highly heterozygous. Ranbow can a...2159 days ago
LAMSA: fast split read alignment with long approximate matches
...ndle various categories of SVs. LAMSA is open source and free for non-commercial use. LAMSA is mainly designed by Bo Liu & Yan Gao and developed by Yan Gao in Center for Bioi...2176 days ago
SOAP2 : Short Oligonucleotide Analysis Package 2
...efficiency by a revolution in the basic data structures and algorithms used.The core algorithms and the indexing data structures (2way-BWT) are developed by the algorithms research gr...2168 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...forms and expression levels while utilizing as many RNA-Seq libraries as possible that contain hundreds of gigabases of data. New techniques are developed so that computations can be p...2127 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous gene pair...2117 days ago
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