Results for "discordant read pairs"
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Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. Th...)Dobzhansky-Muller incompatibility loci. Multiple haploid or diploid pairs of incompatible loci can be spread throughout the genome and affe...2787 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for t...rall short RNA) expression using short-read deep sequencing data. In its...especially adapted for the analysis of reads generated with the Illumina...miRNA) expression profiles and cluster reads...
2784 days ago
- Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a command subcommand syntax:...
2778 days ago
- Metagenomics sequencing projects collect...lassification of raw sequence reads into groups representing the...fficult, by producing shorter read lengths than previous technol...equences as short as 100 base pairs (bp) have until now been rel...nces, can accurately classify reads as short as 100 bp. Its accur...
2778 days ago
- Visualization has played an extremely important role in the curr...r, most of the information in read-to-reference or genome-genome...l variations captured by long reads or assembled contigs often n...atterns in alignments of many reads across multiple chromosomes,...th long, short, or paired-end reads...
2767 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing...load package. Once you have done this, you will be ready to try some example analyses...m can perform a function that isn't listed, you can read...
2761 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process...equencing data. ART can also simulate reads using user own read error mo...n sequencing data analysis, including read...
2754 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq...the same directory. Simulate diploid reference and read...2735 days ago
- Bipype is a very useful program, which prepare a..., then bipype does reconstruction and pairs merging. After that biodiver...finds the SA coordinates of the input reads and generates alignments in the SAM format given single-end reads, aligns reads to reference se...
2726 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop comp...base) For the impatient A typical Minia command line looks like: ./minia -in reads...
2719 days ago
