Results for "discordant read pairs"
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fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are supp...pair of files as input. If no input file is specified, fqtools will attempt to read...2719 days ago
- PRISM is a software for split read (reads which span across a structrual variant --...d tandom duplications with the direction of discordant read pairs. PRISM_CTX is a tool for det...information is available in the PRISM README file and PRISM_CTX...
2717 days ago
- caffMatch is a novel scaffolding tool ba...files produced after mapping reads to contigs and the resulting...) corresponding to the second read of the read pair; -i)... -t) Bundle threshold. Pairs of contigs supported by number of read pairs less than the value of this a...
2714 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and eco...ortunately, the mapping and alignment of mate pair read pairs to a reference genome is a c...ry preparation protocol artifacts (biotin junction reads, paired-end read contaminatio...2713 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run...ory. PEAR evaluates all possible paired-end read overlaps and without requirin...ntation, it can merge millions of paired end reads...
2708 days ago
- Cgaln (Coarse grained alignment) is a program designed to align a pair of whole geno...can filter noisy outputs without missing the most important homologous segment pairs. http://www.iam.u-tokyo.ac.j...
2643 days ago
- PANDASEQ assembles paired-end Illumina reads into sequences, trying to correct for errors and uncalled bases. The assembler reads two files in FASTQ format wi...aximise the probability of the forward and reverse reads...
2673 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...omatically via a simple GUI. Contig boundaries and read coverage can be displayed for...led sequence data. BRIG also accepts SAM-formatted read-...
2649 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic gene...uences. As input, DAGchainer accepts a list of gene pairs with sequence homology along...homologs, maximally scoring chains of ordered gene pairs are computed and reported. Th...2648 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variat...found in downloads.----- PBJelly -----Read The Paper http://www.plo...d pipeline that aligns long sequencing reads (such as PacBio RS reads or...draft genomes. ----- PBHoney -----Read...2638 days ago
