Results for "divergence"
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...named Near HGT, based on the synteny index, to measure the divergence of a gene from its native gen...hm assigns a confidence score based on “unusual” sequence divergence. A gene exhibiting exceptiona...2889 days ago
Comparative genomics educational material and papers bookmarks
...hinsp;kilobases (kb)), indicating that both lineages evolved with an average rate of ~2.1 large-scale rearrangements per million years after the divergence from a common cetartiodactyl...2748 days ago
- ...e often affected by mis-assemblies (no de novo assembler / scaffolder is perfect...), which breaks synteny. pyScaf works very well if divergence between reference genome and...
2708 days ago
FSA: Fast Statistical Alignment
...in, RNA or DNA sequences. Much as distance-based phylogenetic reconstruction methods like Neighbor-Joining build a phylogeny using only pairwise divergence estimates, FSA builds a multi...2660 days ago
MCMCTREE: a phylogenetic program for Bayesian estimation of species divergence times
MCMCTREE is a phylogenetic program for Bayesian estimation of species divergence times using soft fossil constraints under various molecular clock models. This is part of the ...2179 days ago
- ...gnment with Successive Refinement) for mapping Single Molecule Sequencing (SMS) reads that are thousands to tens of thousands of bases long with divergence between the read and genome d...
2189 days ago
Retrieving Taxonomic Information with R
...ording to phylogenetic classification into Phylostrata (Phylostratigraphy) or to retrieve species specific taxonomic information when performing Divergence Stratigraphy (see Introd...1726 days ago
