Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, a...2686 days ago
2685 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count matrix Perform RNA velocity and s...1121 days ago
2654 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distan...2640 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of new features and analytical methods allowing extensi...2640 days ago
2629 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer accepts a list of gene pairs with sequence homolo...2628 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...in Strand NGS is end-to-end, spanning alignment to variant calling in DNA-Seq, and alignment to quantificat...“For liquid biopsies and low-grade FFPE samples, UMI support in DNA-Seq enables the detection of soma...2381 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modif...2568 days ago