UCSC Genome Browser and Blat software !
...mercial licensing of the Genome Browser software, see http://genome.ucsc.edu/license/. The Blat and In-Sil...cs (http://www.kentinformatics.com). More at http://hgdownload.cse.ucsc.edu/admin/exe/3014 days ago
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RNA-Seq De novo Assembly Using Trinity
...a. Trinity combines three independent software modules: Inchworm, Chrysalis, and...ity partitions the sequence data into many individual de Bruijn graphs, each repr...graphs. Butterfly then processes the individual graphs in parallel, tracing...2979 days ago
2965 days ago
RACA: Reference-Assisted Chromosome Assembly
...gments using comparative genome information and paired-end reads. http://www.ncbi.nlm.nih.gov/pubmed/23307812 http://bioen-compbio.bioen.illinois.edu/RACA/2965 days ago
REAPR: a universal tool for genome assembly evaluation
...matically break incorrect scaffolds and flag other errors in an assembly for manual inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly base...2965 days ago
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