Taverna Workflow Management System
...by the myGrid project and is funded through a range of organisations and projects. The Taverna suite is written in Java and includes the Taverna Engine(used for enacting workflows)...3908 days ago
RASTtk : algorithm for building custom annotation pipelines and annotating batches of genomes
The RAST (Rapid Annotation using Subsystem Technology) annotation engine was built in 2008 to annotate bacterial and archaeal genomes. It works by offering a standard software pipelin...2922 days ago
Many-Core Engine (MCE) for Perl example
...e worker. CORE MODULES Three modules make up the core engine for MCE. MCE::Core Provides the Core API for Many-Core Engine. The various MCE options are...a single module. MCE::Queue exchanges data via the core engine to enable queuing to work for...2643 days ago
Enrichr: a comprehensive gene set enrichment analysis
...amming interface and visualization of the results as clustergrams. Overall, Enrichr is a comprehensive resource for curated gene sets and a search engine that accumulates biological k...2557 days ago
2550 days ago
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication
...nch in 2016. Here, we present a newly implemented background annotation engine for DFAST, which is also available as a standalone command-line program. The new engine can annotate a typical-sized...2356 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
...rence), Reduces the processing time of sequences comparisons while providing highest quality results, Contains a fully integrated data filtering engine capable of selecting relevant...2339 days ago
TeachEnG: Teaching Engine for Genomics
TeachEnG (pronounced “teaching”), a Teaching Engine for Genomics, provides educational games to help students and researchers understand key bioinformatics concepts. The c...2327 days ago
GIGGLE: a search engine for large-scale integrated genome analysis
GIGGLE is a genomics search engine that identifies and ranks the significance of genomic loci shared between query features and thousands of genome interval files. GIGGLE (https://gi...2299 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
...ribed by Goris et al. 2007. However, it avoids expensive sequence alignments and uses Mashmap as its MinHash based sequence mapping engine to compute the orthologous ma...2115 days ago