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Results for "estimate"

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• • Jit@jit.aber

  

  GenomeScope: open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads

  Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose para...

  Tags: Bioinformatics, Analysis, NGS, GenomeScope, Genome, Stats, Estimate, Heterozygosity, repeat content, Statistical

  2355 days ago

• • Marysia@marysia

  

  Is this right to say genome size with their contigs file size?

  I usually report and estimate the genome size by looking into file size of the contigs. Is this right way? 

  Tags: Genome, Size, Estimate

  2581 days ago

• • Jit@jit.aber

  

  Estimate the genome size https://bioinformatics.uconn.edu/genome-size-estimation-tutorial/ #Genome #Size #Estimate

  Tags: Genome, Size, Estimate

  2281 days ago

• • LEGE@lege

  

  #Estimate the #insert #size with mapped reads $ head -10000 mappings.sam | awk '{ if ($9 > 0) { N+=1; S+=$9; S2+=$9*$9 }} END { M=S/N; print "n="N", mean="M", stdev="sqrt ((S2-M*M*N)/(N-1))}'

  Tags: Estimate, insert, size

  1633 days ago

• • BioJoker@biojoker

  

  How to estimate the heterozygosity ?

  I am working on a new genome, and wondering about prediction methods for heterozygosity in the genome. Any tools suggestions and helps are welcome. 

  Tags: heterozygosity, estimate, genome, reads

  1982 days ago