Results for "exact"
Top-level pages
Next generation sequencing in R or bioconductor environment
...nction as introduced above. Documentation Differential Gene Expression Analysis with edgeR The edgeR package uses empirical Bayes estimation and exact tests based on the negative b...3640 days ago
Commercial and public next-gen-seq (NGS) software
...and Alignment by Hashing Algorithm) is a tool for rapidly finding near exact matches in DNA or protein dat...absent from previous genome assemblies. Broad Institute. Edena - Edena (Exact DE Novo Assembler) is an asse...3534 days ago
Software packages for next gen sequence analysis
...and Alignment by Hashing Algorithm) is a tool for rapidly finding near exact matches in DNA or protein dat...sent from previous genome assemblies. Broad Institute. * Edena - Edena (Exact DE Novo Assembler) is an asse...3258 days ago
- ...Quality filtering Fixed-length trimming Generation of histograms (base composition, quality, etc) Subsampling (to a fraction of input reads, or an exact number of reads or bases) Cha...
2729 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...t on samtools, R and VGAM pack for R Input: BAM Output: not sure what exact type of file- “The form...ects somatic SNVs with multiple testing correction, uses Fisher’s exact test; dependent on git, samto...2924 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...MinHash dimensionality-reduction technique) Software (C++) https://github.com/marbl/mash Kraken Taxonomic assignment in metagenome analysis by exact k-mer search; LCA assign...2386 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...le genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a genome (say, human) contains an exact repeat somewhere, reads mappi...2330 days ago
