MeDuSa: a multi-draft based scaffolder
...igs. MeDuSa formalises the scaffolding problem by means of a combinatorial optimisation formulation on graphs and implements an efficient constant factor approximation algorithm to so...2285 days ago
zPicture: A dynamic blastz alignment visualization
zPicture is a dynamic alignment and visualization tool that is based on blastz alignment program utilized by PipMaker. zPicture alignments can be automatically submitted to rVista 2.0 to identify conserved transcription factor binding sites.2300 days ago
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution
...he multiTF program for detecting evolutionarily conserved transcription factor binding sites in multiple ali...y generated in GALA can be viewed in Mulan, and conserved transcription factor binding sites identified with...2094 days ago
ChIPBase: open database for studying the transcription factor binding sites and motifs
ChIPBase v2.0 is an open database for studying the transcription factor binding sites and motifs, and decoding the transcriptional regulatory networks of lncRNAs, miRNAs, other ncRNAs...871 days ago
oGNM:Conformational dynamics based on contact topology in a coarse-grained presentation
...s, a part of a protein complex, the DNA in complexed with transcription factors, or even a large ligand (or...time) and more accurate (enhanced correlation between predictions and B-factors). The environment considerat...852 days ago