BOL: Results for "fastx"

Results for "fastx"

- Rahul Nayak@rahul
Useful Publications and Websites for Deep Sequencing Data Analysis
...uencing errors. Kelley et al, Genome Biol 11(11):R116, 2010. PubMed FastQC: a quality control tool for high-throughput sequence data. Home Page FASTX-toolkit: FASTQ/A short-reads...
3773 days ago
- Abhimanyu Singh@abhimanyu
Perl one-liner for bioinformatician !!!
...ound massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and some tools for manipulating them (fastx toolkit, samtools, vcftools,...
3621 days ago
+1 more Top-level pages

- Jit@jit.aber
Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern
2494 days ago

- Jit@jit.aber
FASTQ to FASTA
...4==1) {printf(">%s\n",substr($0,2));} else if(NR%4==2) print;}' > file.fa #seqtk seqtk seq -a input.fastq > output.fasta #Bioawk bioawk -c fastx '{print ">"$name"\n"$seq}' in...
843 days ago