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MinION_GC: An R script to do some QC on MinION data
Other tools focus on getting data out of the fastq or fast5 files, which is slow and computationally intens...nefit of this approach is that it works on a single, small, .txt summary file. So it's a lot quicker than m...2359 days ago
- ...nd a pipeline for their use. Synima has a range of graphical parameters including size, colours, order, and labels, which are specified in a config file generated by the first run of...
2352 days ago
- ...ed use of GI numbers. Please read carefully the Preface (page 3) and the File of annotated genomes section...version 3.1 User Guide. Thanks to Tom Slezak for revsing the get_genbank_file3 script and to Tod Stuber (US...
2354 days ago
Biological file format tutorial
This section explains some of the commonly used file formats in bioinformatics. The information provided here is basic and designed to help users to distinguish the difference betwee...2345 days ago
Jabba: Hybrid Error Correction for Long Sequencing Reads
...es should be in fasta or fastq format. These sequences will be corrected (e.g. PacBio reads). The corrections will be written to a file Jabba fasta.The output is a file in fasta format with correcti...1996 days ago
ECTOOLS: Long Read Correction and other Correction tools
...ge is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scriptsare at the bottom of this file. Contact: gurtowsk@cshl.edu...2327 days ago
LRCstats: Long Read Correction Statistics
...ignments between the uncorrected long reads (uLR) and the corresponding sequences in the reference genome (Ref) are given in some sort of alignment file and then aligning the correct...2327 days ago
mojolicious: a next generation web framework for the Perl programming language.
...amazing real-time web framework, allowing you to easily grow single file prototypes into well-structur...otiation, session management, form validation, testing framework, static file server, CGI/PSGI detecti...2319 days ago
Dot, an interactive viewer for genome-genome comparison
...gner the most commonly used software method for aligning genome assemblies. A quick script called DotPrep.py converts the delta file to a more streamlined coordinates file with an index that enables Do...2317 days ago
- ...e common options for most BBMap suite programs and depending on the file extension the input/output fo...a command-line parameter, regardless of whitespace, or the length of the file. This may be convenient if yo...
2306 days ago
