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...ion, please see our wiki. HybPiper is run separately for each sample (single or paired-end sequence reads). When HybPiper generates sequence files from the reads, it does so in...2741 days ago
- ...lated sequences RECORD outperforms more general assisted-assembly software. More at https://sourceforge.net/projects/record-genome-assembler/files/
2720 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contig...
2707 days ago
- ...e suite for fast processing of FASTQ files. Various file manipulations a...ds will take either a single file or a pair of files as input. If no input file is...FASTQ data, either a single file or a pair of files will be generated. If no ...
2707 days ago
Standardized velvet assembly report
...ze mysequences.fa > mysequences.stat or gunzip -c mysequences.fa.gz | fastaAllSize > mysequences.stat Substitute fastqAllSize for fastq files. ./permute.sh mysequences&nb...2706 days ago
Understanding Greedy Algorithms
...des/MIT7_91JS14_Lecture6.pdf http://schatzlab.cshl.edu/teaching/AssemblyClass/01.%20Assembly%20Intro.pdf http://lsl.sinica.edu.tw/Services/Class/files/20150612449.pdf http://www.c...2703 days ago
- ...ap reads to contigs (instead of providing .sam files). The arguments accepted by...tory -- this is the directory where ScaffMatch files are stored. These are .sam fi...s. Do not use this option if you provide reads files; -1) (Comma separated...
2702 days ago
MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation
...on software. Produces more contiguous assemblies, higher N50 values and lower number of contigs. More at https://sourceforge.net/projects/sb2nhri/files/MyPro/2700 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
..., long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs...2696 days ago
- ...This increases the size and build time but greatly simplifies installation and version management. The installation does not create or modify any files outside the progressiveCactus...
2667 days ago
