2713 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2149 days ago
2135 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2134 days ago
2084 days ago
1534 days ago
1450 days ago
1224 days ago
Tadpole is 250x faster than SPADes assembler !
...ounttodump=1 Only dump kmers with at least this depth. showstats=t Print assembly statistics after writing contigs. Prefiltering parameters: prefilter=0 If set to a positiv...984 days ago
959 days ago