SATSUMA : Highly sensitive whole-genome synteny alignments.
...is designed to run on multi-core architectures. The run-time for aligning two bird-size genomes (~1.2 Gb) is around two days on 24 CPUs. You can find the manual here. Download the...2928 days ago
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Maq: Mapping and Assembly with Quality
...ndex -i -c consensus.cns all.map; maqview -c consensus.cns all.map Even for advanced maq users, running `maq.pl demo' is recommended. You may find something helpful.2735 days ago
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